Publications

  1. Antonio Galves, Eva Löcherbach and Christophe Pouzat (2024) Probabilistic Spiking Neuronal Nets. Neuromathematics for the Computer Era, Springer, book series: Lecture Notes on Mathematical Modelling in the Life Sciences. The companion website describes and documents the codes simulating the models introduced in the book.
  2. Christophe Pouzat (2023) Un court état des lieux de la recherche reproductible, Matapli, 131, pp 33-42.
  3. Christophe Pouzat (2022) Pourquoi devrions-nous arrêter d’embêter les gens avec la « recherche reproductible » et autres « bonnes pratiques » ?, Statistique et Société (in French), 10: 53-57.
  4. Céline Duval, Éric Luçon, Christophe Pouzat (2022) Interacting Hawkes processes with multiplicative inhibition, Stochastic Processes and their Applications, 148: 180-226, DOI: 10.1016/j.spa.2022.02.008.
  5. Christophe Pouzat (2021) Un panorama de la recherche reproductible, Bulletin de la ROADEF, 43.
  6. Haeger Alexa, Pouzat Christophe, Luecken Volker, N’Diaye Karim, Elger Christian, Kennerknecht Ingo, Axmacher Nikolai and Dinkelacker Vera (2021) Face Processing in Developmental Prosopagnosia: Altered Neural Representations in the Fusiform Face Area. Frontiers in Behavioral Neuroscience, 15: 283, DOI: 10.3389/fnbeh.2021.744466. Supplementary material available on GitHub: haeger-et-al-face-processing-in-developmental-prosopagnosia.
  7. Simon Hess, Christophe Pouzat, Peter Kloppenburg (2021) A simple method for getting standard error on the ratiometric calcium estimator. MethoodsX, 8: 101548, DOI: 10.1016/j.mex.2021.101548.
  8. Simon Hess, Christophe Pouzat, Peter Kloppenburg (2021) Datasets for calcium dynamics comparison between the whole-cell and a β-escin based perforated patch configuration in brain slices from adult mice. Data in Brief, 39: 107494, DOI: 10.1016/j.dib.2021.107494.
  9. Simon Hess, Christophe Pouzat, Lars Paeger, Andreas Pippow and Peter Kloppenburg (2021) Analysis of neuronal Ca2+ handling properties by combining perforated patch clamp recordings and the added buffer approach. Cell Calcium, 97: 102411, DOI: 10.1016/j.ceca.2021.102411.
  10. Ali-Kemal Aydin, William D. Haselden, Yannick Goulam Houssen, Christophe Pouzat, Ravi L. Rungta, Charlie Demené, Mickael Tanter, Patrick J. Drew, Serge Charpak & Davide Boido (2020) Transfer functions linking neural calcium to single voxel functional ultrasound signal. Nature Communications 11, 2954.
  11. Galves, A., Löcherbach, E., Pouzat, C., Presutti E. (2020) A System of Interacting Neurons with Short Term Synaptic Facilitation. J Stat Phys 178: 869–892, https://doi.org/10.1007/s10955-019-02467-1. A preprint is available on arXiv and the complete C codes with documentation can be found on PLMlab.
  12. Suhan Senova, Cyril Poupon, Julien Dauguet, Hannah Stewart, Guillaume P Dugué, Caroline Jan, Koichi Hosomi, G.S. Ralph, L. Barnes, Xavier Drouot, Christophe Pouzat, Jean François Mangin, Frédéric Pain, Isabelle Doignon, Romina Aron Badin, Emmanuel Brouillet, Edward Boyden, K.A. Mitrophanous, Philippe Hantraye and Stéphane Palfi (2018) Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates Scientific Reports 8, https://doi.org/10.1038/s41598-018-21486-8.
  13. Lars Paeger, Andreas Pippow, Simon Hess, Moritz Paehler, Andreas Husch, Christophe Pouzat, Jens C. Brüning, Peter Kloppenburg (2017) Energy imbalance alters Ca2+-handling and excitability of POMC neurons eLIFE 2017;6:e25641 doi: 10.7554/eLife.25641.
  14. Stephen Eglen, Ben Marwick, Yaroslav Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R Angus Silver, Andrew Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J Willshaw, Christophe Pouzat, Jean-Baptiste Poline (2017) Toward standard practices for sharing computer code and programs in neuroscience Nature Neuroscience 20: 770-773 (web, cover piece by Stephen Eglen).
  15. Arthur Leblois and Christophe Pouzat (2017) Multi-Unit Recording: Fundamental Concepts and New Directions in Neurobiology of Motor Control, edited by Scott L. Hooper and Ansgar Büschges, John Wiley & Sons, DOI: 10.1002/9781118873397.ch3.
  16. Christophe Pouzat (2016) Analysis of Extracellular Recordings in Brain-Computer Interfaces 1: Methods and Perspectives, edited by Maureen Clerc, Laurent Bougrain and Fabien Lotte, iSTE/Wiley. The code generating the figure is available on GitHub.
  17. Christophe Pouzat (2016) Analyse des enregistrements extracellulaires in Les interfaces cerveau-ordinateur 1, edited by Maureen Clerc, Laurent Bougrain and Fabien Lotte, iSTE editions (in French). The code generating the figure is available on GitHub.
  18. Christophe Pouzat and Patricia Reynaud-Bouret (2016) Editorial for the special issue on Statistics and Neurosciences Journal de la Société Française de Statistique 157(1): 1-2. The pdf is available.
  19. Christophe Pouzat and Patricia Reynaud-Bouret (2016) Éditorial du numéro spécial sur la statistique et les neurosciences Journal de la Société Française de Statistique (in French) 157(1): 3-5. The pdf is available.
  20. Christophe Pouzat, Andrew Davison and Konrad Hinsen (2015) La recherche reproductible : une communication scientifique explicite Statistique et Société (in French) 3(1): 35-38. The pdf and some additional marterial are available.
  21. Antoine Chaillet, Diane Da Silva, Georgios Detorakis, Christophe Pouzat and Suhan Senova (2014) Optogenetics to Unravel the Mechanisms of Parkinsonian Symptoms and Optimize Deep Brain Stimulation ERCIM News 1. Special issue on cyberphysical systems (web site).
  22. Christophe Pouzat and Georgios Is Detorakis (2014) SPySort: Neuronal Spike Sorting with Python Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014) (web site), edited by Pierre de Buyl and Nelle Varoquaux, pp. 27–34 (arXiv:1412.6383). A "detailed" version hal-01111654v1 with all the codes is available, as well as its org-mode source file both on GitHub and on zenodo (doi: 10.5281/zenodo.15070).
  23. Sébastien Joucla, Romain Franconville, Andreas Pippow, Peter Kloppenburg and Christophe Pouzat (2013) Estimating background-subtracted fluorescence transients in calcium imaging experiments: a quantitative approach Cell Calcium 54 (2): 71-85.
  24. Matthieu Delescluse, Romain Franconville, Sébastien Joucla, Tiffany Lieury and Christophe Pouzat (2012) Making neurophysiological data analysis reproducible. Why and how? Journal of Physiology (Paris) 106 (3-4): 159-170 (hal, R vignette version of the toy example, odfWeave R vignette version of the toy example, org-mode/Babel version of the toy example using Maxima and Python, org-mode/Babel version of the toy example using Common Lisp and gnuplot, BibTeX).
  25. Gaute T Einevoll, Felix Franke, Espen Hagen, Christophe Pouzat and Kenneth D Harris (2012) Towards reliable spike-train recordings from thousands of neurons with multielectrodes Current Opinion in Neurobiology 22 (1): 11-17 (url, BibTeX).
  26. Sébastien Joucla, Andreas Pippow, Peter Kloppenburg and Christophe Pouzat (2010) Quantitative estimation of calcium dynamics from ratiometric measurements: A direct, non-ratioing, method Journal of Neurophysiology 103: 1130-1144 (BibTeX).
  27. Z. Tiganj, M. Mboup, C. Pouzat and L. Belkoura (2010) An Algebraic Method for Eye Blink Artifacts Detection in Single Channel EEG Recordings IFMBE Proceedings. 17th International Conference on Advances in Biomagnetism (Biomag2010) 28: 175-178 (BibTeX).
  28. Andreas Pippow, Andreas Husch, Christophe Pouzat and Peter Kloppenburg (2009) Differences of Ca(2+) handling properties in identified central olfactory neurons of the antennal lobe Cell Calcium 46: 87-98 (BibTeX]]).
  29. Christophe Pouzat and Antoine Chaffiol (2009) Automatic Spike Train Analysis and Report Generation. An Implementation with R, R2HTML and STAR Journal of Neuroscience Methods 181: 119-144 (url, pdf, R vignette, BibTeX).
  30. Christophe Pouzat and Antoine Chaffiol (2009) On Goodness of Fit Tests For Models of Neuronal Spike Trains Considered as Counting Processes arXiv preprint (arxiv, pdf, R vignette, BibTeX).
  31. Ricardo Escola, Christophe Pouzat, Antoine Chaffiol, Blaise Yvert, Isabelle E. Magnin and Regis Guillemaud (2008) SIMONE : A Neural Simulator to Test MEA-embedded Algorithms IEEE Transactions on Neural and Rehabilitation Engineering 16: 149-160 (url, BibTeX).
  32. Sheyla Mejia-Gervacio, Thibault Collin, Christophe Pouzat, Yusuf P. Tan, Isabel Llano, and Alain Marty (2007) Axonal Speeding: Shaping Synaptic Potentials in Small Neurons by the Axonal Membrane Compartment Neuron 53: 843-855 (url, BibTeX).
  33. Nicola Testoni, Nicolo Speciale, Andrea Ridolfi, and Christophe Pouzat (2007) Adaptive wavelet-based signal dejittering Microelectronics and Electronics Conference, 2007. RME. Ph.D. Research in pp. 257-260 (url, BibTeX).
  34. Matthieu Delescluse and Christophe Pouzat (2006) Efficient spike-sorting of multi-state neurons using inter-spike intervals information Journal of Neuroscience Methods 150: 16-29 (arxiv, url, BibTeX).
  35. Christophe Pouzat (2005) Technique(s) for Spike - Sorting in Methods and Models in Neurophysics. Les Houches 2003 Summer School, C. C. Chow, B. Gutkin, D. Hansel, C. Meunier and J. Dalibard ed. Elsvier pp. 729-786 (arxiv, BibTeX).
  36. C. Pouzat, M. Delescluse, P. Viot and J. Diebolt (2004) Improved spike-sorting by modeling firing statistics and burst-dependent spike amplitude attenuation: a Markov chain Monte Carlo approach Journal of Neurophysiology 91: 2910-2928 (BibTeX).
  37. C. Pouzat, O. Mazor and G. Laurent (2002) Using noise signature to optimize spike-sorting and to assess neuronal classification quality Journal of Neuroscience Methods 122: 43-57 (url, pdf, BibTeX).
  38. L. Forti, C. Pouzat and I. Llano (2000) Action potential-evoked Ca2+ signals and calcium channels in axons of developing rat cerebellar interneurones Journal of Physiology 527: 33-48 (BibTeX).
  39. C. Pouzat and A. Marty (1999) Somatic recording of GABAergic autoreceptor current in cerebellar stellate and basket cells Journal of Neuroscience 19: 1675-1690 (BibTeX).
  40. C. Pouzat and A. Marty (1998) Autaptic inhibitory currents recorded from interneurones in rat cerebellar slices Journal of Physiology 509: 777-783 (BibTeX).
  41. C. Pouzat and S. Hestrin (1997) Developmental regulation of basket/stellate cell–>Purkinje cell synapses in the cerebellum Journal of Neuroscience 17: 9104-9112 (BibTeX).
  42. L. M. Wahl, C. Pouzat and K. J. Stratford (1996) Monte Carlo simulation of fast excitatory synaptic transmission at a hippocampal synapse Journal of Neurophysiology 75: 597-608 (BibTeX).
  43. T. S. Sihra, A. C. Nairn, P. Kloppenburg, Z. Lin and C. Pouzat (1995) A role for calcineurin (protein phosphatase-2B) in the regulation of glutamate release Biochem Biophys Res Commun 212: 609-616 (BibTeX).

Author: Christophe Pouzat

Created: 2024-11-13 mer. 10:31

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